After the original rapture of conversion had settled in, (Bob) Dylan backed away from his obviously Christian lyrics and returned to his more metaphorical use of language.

there was a common understanding that religion generally served the powerful, who manipulated the words of the gods and prophets to justify their greed and lust for power. Yet Christianity comes in numerous guises; mystical to dogmatic; it is used by some as a reason to justify their wars, their oppression and their hatreds. Others use it to oppose those wars and other injustices.